A coupled physical-biological model of the Northern Gulf of Mexico shelf: model description, validation and analysis of phytoplankton variability

The Texas-Louisiana shelf in the Northern Gulf of Mexico receives large inputs of nutrients and freshwater from the Mississippi/Atchafalaya River system. The nutrients stimulate high rates of primary production in the river plume, which contributes to the development of a large and recurring hypoxic area in summer, but the mechanistic links between hypoxia and river discharge of freshwater and nutrients are complex as the accumulation and vertical export of organic matter, the establishment and maintenance of vertical stratification, and the microbial degradation of organic matter are controlled by a non-linear interplay of factors. Unraveling these interactions will have to rely on a combination of observations and models. Here we present results from a realistic, 3-dimensional, physical-biological model with focus on a quantification of nutrient-stimulated phytoplankton growth, its variability and the fate of this organic matter. We demonstrate that the model realistically reproduces many features of observed nitrate and phytoplankton dynamics including observed property distributions and rates. We then contrast the environmental factors and phytoplankton source and sink terms characteristic of three model subregions that represent an ecological gradient from eutrophic to oligotrophic conditions. We analyze specifically the reasons behind the counterintuitive observation that primary production in the light-limited plume region near the Mississippi River delta is positively correlated with river nutrient input, and find that, while primary production and phytoplankton biomass are positively correlated with nutrient load, phytoplankton growth rate is not. This suggests that accumulation of biomass in this region is not primarily controlled bottom up by nutrient-stimulation, but top down by systematic differences in the loss processes

Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307

Abstract Recent reports indicate the emergence of a new carbapenemase producing Klebsiella pneumoniae clone, ST307. Here we show that ST307 emerged in the mid-1990s (nearly 20 years prior to its first report), is already globally distributed and is intimately associated with a conserved plasmid harbouring the bla CTX-M-15 extended-spectrum beta-lactamase (ESBL) gene plus other antimicrobial resistance determinants. Our findings support the need for enhanced surveillance of this widespread ESBL clone in which carbapenem resistance is now emerging

Allergic sensitisation in tuberculosis patients at the time of diagnosis and following chemotherapy

<p>Abstract</p> <p>Background</p> <p>It is still a matter of debate whether there is an association between infection with <it>Mycobacterium tuberculosis </it>(<it>M. tuberculosis</it>) and allergy. Previously, we have shown higher levels of specific IgE to different inhalant allergens and total IgE in tuberculosis (TB) patients compared to controls. The objectives of this study were to evaluate a possible change in allergic sensitisation after successful TB treatment and to confirm the finding of our previous study of enhanced allergic sensitisation in TB patients compared to controls in a more controlled setting. Additionally, we wanted to determine the cytokine profile in the same groups and finally to evaluate the association between the presence of Bacillus Calmette-Guérin vaccination (BCG) scar and allergic sensitisation among the controls.</p> <p>Methods</p> <p>Sera were analysed for specific IgE to inhalant allergens (Phadiatop) and total IgE by the use of ImmunoCAP 1000 (Pharmacia Diagnostics). Thirteen different cytokines were also analysed in the sera by multiplex bead immunoassay (Luminex 100, Luminex Corporation), and clinical symptoms of allergy and BCG scar were reported in a questionnaire.</p> <p>Results</p> <p>A reduction in levels of specific and total IgE were observed after successful TB treatment. TB patients also had higher levels of specific and total IgE compared to healthy controls. Both interleukin (IL)-6 and interferon (IFN)γ were higher in TB patients compared to healthy controls. The levels of IL-6 were reduced after successful TB treatment. The presence of a BCG scar was associated with a reduced risk of developing allergic sensitisation.</p> <p>Conclusion</p> <p>We observed a reduced level of allergic sensitisation after successful TB treatment. TB patients seem to be more allergically sensitised than healthy controls, confirming our previous finding. Furthermore, we observed an inverse association between allergic sensitisation and visible BCG scar, which adds additional support to the hygiene hypothesis.</p

Simulating the effects of phosphorus limitation in the Mississippi and Atchafalaya River plumes

The continental shelf of the northern Gulf of Mexico receives high dissolved inorganic nitrogen and phosphorus loads from the Mississippi and Atchafalaya rivers. The nutrient load results in high primary production in the river plumes and contributes to the development of hypoxia on the Louisiana shelf in summer. While phytoplankton growth is considered to be typically nitrogen-limited in marine waters, phosphorus limitation has been observed in this region during periods of peak river discharge in spring and early summer. Here we investigate the presence, spatio-temporal distribution and implications of phosphorus limitation in the plume region using a circulation model of the northern Gulf of Mexico coupled to a multi-nutrient ecosystem model. Results from a 7-yr simulation (2001–2007) compare well with several sources of observations and suggest that phosphorus limitation develops every year between the Mississippi and Atchafalaya deltas. Model simulations show that phosphorus limitation results in a delay and westward shift of a fraction of river-stimulated primary production. The consequence is a reduced flux of particulate organic matter to the sediment near the Mississippi delta, but slightly enhanced fluxes west of Atchafalaya Bay. Simulations with altered river phosphate concentrations (±50%) show that significant variation in the spatial extent of phosphorus limitation (±40% in July) results from changes in phosphate load

Development, Operation, and Results From the Texas Automated Buoy System

The Texas Automated Buoy System (TABS) is a coastal network of moored buoys that report near-real-time observations about currents and winds along the Texas coast. Established in 1995, the primary mission of TABS is ocean observations in the service of oil spill preparedness and response. The state of Texas funded the system with the intent of improving the data available to oil spill trajectory modelers. In its 12 years of operation, TABS has proven its usefulness during realistic oil spill drills and actual spills. The original capabilities of TABS, i.e., measurement of surface currents and temperatures, have been extended to the marine surface layer, the entire water column, and the sea floor. In addition to observations, a modeling component has been integrated into the TABS program. The goal is to form the core of a complete ocean observing system for Texas waters. As the nation embarks on the development of an integrated ocean observing system, TABS will continue to be an active participant of the Gulf of Mexico Coastal Ocean Observing System (GCOOS) regional association and the primary source of near-surface current measurements in the northwestern Gulf of Mexico. This article describes the origin of TABS, the philosophy behind the operation and development of the system, the resulting modifications to improve the system, the expansion of the system to include new sensors, the development of TABS forecasting models and real-time analysis tools, and how TABS has met many of the societal goals envisioned for GCOOS

Central peak position in magnetization loops of high-TcT_c superconductors

Exact analytical results are obtained for the magnetization of a superconducting thin strip with a general behavior J_c(B) of the critical current density. We show that within the critical-state model the magnetization as function of applied field, B_a, has an extremum located exactly at B_a=0. This result is in excellent agreement with presented experimental data for a YBCO thin film. After introducing granularity by patterning the film, the central peak becomes shifted to positive fields on the descending field branch of the loop. Our results show that a positive peak position is a definite signature of granularity in superconductors.Comment: $ pages, 6 figure